Please use this identifier to cite or link to this item: http://dr.iiserpune.ac.in:8080/xmlui/handle/123456789/9804
Full metadata record
DC FieldValueLanguage
dc.contributor.advisorRATNAPARKHI, GIRISH-
dc.contributor.authorDAS, SUBHRADIP-
dc.date.accessioned2025-05-02T11:45:35Z-
dc.date.available2025-05-02T11:45:35Z-
dc.date.issued2025-05-
dc.identifier.citation141en_US
dc.identifier.urihttp://dr.iiserpune.ac.in:8080/xmlui/handle/123456789/9804-
dc.description.abstractEarly embryonic development in Drosophila melanogaster is a tightly regulated process orchestrated by maternally deposited factors during oogenesis, which set the stage for body axis formation, germ cell specification, and subsequent cellular differentiation. Before fertilization even occurs, maternal RNAs and proteins establish the blueprint for the anterior-posterior (AP) and dorsoventral (DV) axes of the embryo. Key maternal effect genes—bicoid and hunchback for anterior patterning, caudal and nanos for posterior development—are asymmetrically localized within the egg, creating concentration gradients that later drive the spatial expression of zygotic genes. The DV axis, by contrast, is defined by the position of the oocyte nucleus, which dictates the dorsal expression of gurken and subsequent activation of the EGF receptor torpedo in adjacent follicle cells. In the absence of this signal, pipe is expressed, initiating a cascade that activates the Toll pathway. Its effector, Dorsal (DL), translocates into nuclei along a gradient and activates ventral-specific genes while repressing dorsal fate genes. This spatial patterning of the embryo is facilitated by a transition in developmental control from maternal gene products to zygotic gene expression, known as the maternal-to-zygotic transition (MZT). It is during this phase that somatic sex identity and the segregation of germline cells from somatic lineages are also determined. Germ cell precursors, or pole cells, are specified around nuclear cycle 9 when a few nuclei migrate into the posterior germ plasm, a specialized cytoplasm enriched with determinants such as Oskar. This migration marks the beginning of germ-soma segregation and is essential for the formation of future gonads. Overlaying this transcriptional and translational regulation is a sophisticated layer of post-translational control, particularly via SUMOylation—the covalent attachment of the Small Ubiquitin-like Modifier (SUMO) protein to target substrates. SUMOylation fine-tunes the activity, localization, and stability of key developmental regulators during early embryogenesis. The presence of enriched maternal SUMO and its conjugation machinery in the early Drosophila embryo underscores the significance of this reversible modification during this critical window of development. Functional studies have shown that disruption of SUMOylation leads to a range of developmental defects, highlighting its essential role in coordinating gene regulatory networks. Among the key players subject to SUMOylation are Groucho and Dorsal. Groucho, a transcriptional co-repressor involved in terminal patterning, is SUMOylated and contains a SUMO-interacting motif (SIM). Although mutants resistant to SUMO conjugation show no gross defects in development, biochemical studies reveal that SUMOylation is required for Groucho to interact with Dorsal, suggesting that SUMOylation facilitates critical protein-protein interactions that influence axis patterning. Despite multiple approaches, we were unable to detect SUMOylation of Groucho either in cell culture or in vivo. Future studies could benefit from enriching SUMOylated protein fractions via immunoprecipitation using FLAG-tagged constructs in 529SU cells, followed by detailed expression analysis. Interestingly, mutation of Groucho’s SUMO-interacting motifs (SIMs) leads to a marked reduction in protein half-life, though the underlying mechanism remains unclear. Groucho functions as a well-established transcriptional co-repressor, acting in concert with HDACs to repress various transcription factors, including Dorsal. Further research should aim to dissect how SUMOylation and SIM-mediated interactions influence Groucho's transcriptional regulatory activity and its downstream effectors, particularly during early embryonic development. Structural modeling of Groucho, especially in the context of SIM mutations, may reveal whether these alterations contribute to protein destabilization and functional impairment. Similarly, Dorsal’s stability and activity are closely tied to both phosphorylation and SUMOylation. SUMOylation at lysine 382 enhances its transcriptional potency, while dimerization—enabled by the SIMβ motif—is essential for its nuclear stability and function. Mutations in SIMβ prevent Dorsal dimerization, leading to its destabilization and degradation via a novel pathway, ultimately resulting in embryonic lethality and disrupted DV axis formation. Our experiments consistently revealed that Dorsal (DL) exists in more than two phosphorylated isoforms, indicating the presence of additional phosphorylation sites beyond the known residues S312 and S317. We ruled out S389, identified in a phosphoproteomic screen, as a phosphorylation site. Previous studies (Drier et al., 1999) had already eliminated S70, S79, S103, and S312 as potential targets. Another candidate, S665, was highlighted in a separate phosphoproteomic study (Hilger et al., 2009) and warrants further investigation as a potential phosphorylation site. The mechanism underlying DL degradation remains unclear, particularly whether it proceeds via the 26S proteasome or autophagy. Furthermore, the identity of the kinase(s) responsible for DL phosphorylation is still unknown. The possible crosstalk between SUMOylation and phosphorylation of DL also remains to be explored. Interestingly, our data show that the DLSCR variant is highly active and exhibits elevated phosphorylation levels, though the mechanism driving this remains to be elucidated. Future studies should aim to identify the regulatory pathways and modifications responsible for DL activity and turnover. In addition to these regulators, the protein Caspar, a Drosophila homolog of mammalian FAF1, emerges as a novel component influencing early development. Caspar is highly expressed in early embryos and in primordial germ cells, and its maternal depletion results in severe gastrulation defects and a reduced number of pole cells. Mechanistically, Caspar modulates the levels of key germ cell determinants such as Oskar and Smaug, possibly through a partnership with TER94 and a role in ubiquitin-mediated protein degradation during MZT. This regulatory role connects Caspar to both cytoskeletal integrity and germ cell fate specification, underlining the multifaceted nature of post-translational control in early development. Our findings clearly establish the involvement of Caspar (Casp) and TER94 in the formation and specification of primordial germ cells (PGCs). However, further investigation is required to define their precise molecular functions in this process. Notably, Casp remains the only protein reported to regulate germ cell fate and number by modulating both somatic signals and pole plasm components. The phenotypic parallels observed between the loss of ZGA components and Casp/TER94 suggest convergence on a common regulatory axis involving BMP signaling and protein degradation pathways. Future studies should aim to elucidate the mechanistic interplay between Casp/TER94, BMP signaling, and proteostasis. Additionally, exploring the role of zygotic factors such as Smaug may provide critical insights into how maternal and zygotic regulatory networks intersect during early embryogenesis. In summary, early embryogenesis in Drosophila is not solely a result of gene expression patterns but is profoundly shaped by post-translational modifications such as SUMOylation. These modifications ensure precise temporal and spatial control of protein function, stability, and interaction. The interplay between maternal effect genes, signaling pathways, and SUMO-regulated protein networks governs not only the formation of body axes and cell identities but also the critical transition from maternal to zygotic control. This study underscores the importance of SUMOylation in embryonic patterning and germline specification, offering insights that extend beyond Drosophila to broader principles of developmental biology.en_US
dc.description.sponsorshipCSIRen_US
dc.language.isoenen_US
dc.subjectDrosophilaen_US
dc.subjectEmbryonic Patterningen_US
dc.subjectCell Fate Specificationen_US
dc.subjectMaternal-to-Zygotic Transition (MZT)en_US
dc.subjectSUMOylationen_US
dc.subjectSUMO Interacting Motif (SIM)en_US
dc.subjectDorsal-Ventral (DV) Axisen_US
dc.subjectPrimordial Germ Cells (PGCs)en_US
dc.subjectDorsalen_US
dc.subjectGrouchoen_US
dc.subjectCasparen_US
dc.titleCell fate specification in the Drosophila embryo: Maternal Roles for Dorsal, Caspar and Grouchoen_US
dc.typeThesisen_US
dc.description.embargoNo Embargoen_US
dc.type.degreePh.Den_US
dc.contributor.departmentDept. of Biologyen_US
dc.contributor.registration20193641en_US
Appears in Collections:PhD THESES

Files in This Item:
File Description SizeFormat 
20193641_Subhradip_Das_PhD_Thesis.pdfPhD Thesis8.09 MBAdobe PDFView/Open    Request a copy


Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.