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Understanding the Role of Cellular Dynamics in MDCKII Domes Formation

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dc.contributor.advisor Villa, Stefano
dc.contributor.author KURPATI RAGHAVENDRA, KISHAN
dc.date.accessioned 2026-05-14T11:54:15Z
dc.date.available 2026-05-14T11:54:15Z
dc.date.issued 2026-05
dc.identifier.citation 76 en_US
dc.identifier.uri http://dr.iiserpune.ac.in:8080/xmlui/handle/123456789/10978
dc.description.abstract Epithelial monolayers serve fundamental physiological roles in development, homeostasis, and disease; yet how collective cell dynamics and substrate mechanics coordinate to drive three-dimensional morphogenesis remains poorly understood. Here, we investigate how substrate mechanics and pharmacological modulation of cell motility and contractility influence monolayer dynamics, dome formation kinetics, and cell adhesion in MDCKII epithelial cells. Using epifluorescence and spinning disk confocal microscopy, we tracked monolayer dynamics and dome formation on glass, PDMS, and uniform or micropatterned protein coatings. Quantitative analysis of velocity fields revealed a transient motility peak 55-67 hours post-seeding. HGF increased peak velocities in a dose-dependent manner, while blebbistatin suppressed motility and contractility without altering adhesion strength. Blebbistatin-treated cells formed smaller domes that collapsed gradually rather than suddenly, with rapid dome turnover and shorter lifetimes. In contrast, PDMS—which reduces adhesion while increasing motility—produced larger domes with collapse dynamics similar to controls. Confocal imaging revealed that dome collapse involves transient loss of actin stress fibers in dome cells, which are then pulled outward by contractile neighbors before repolarizing and migrating back—a recovery abolished by blebbistatin. Centrifugation-based adhesion assays quantified substrate-specific detachment thresholds.[SV1.1][KK1.2] These findings reveal that monolayer motility and dome kinetics are governed by interplay between actomyosin contractility, cell motility, and substrate adhesion, with implications for understanding epithelial morphogenesis, tissue mechanics, and biomaterial design. en_US
dc.description.sponsorship I am immensely thankful to my supervisor and guide, Dr. Stefano Villa, for his continuous and consistent feedback and input on all my experiments. I also thank him for several of the analyses credited to him in this thesis. I am grateful to Sidharth Das, a friend and labmate, for his valuable feedback. I am deeply grateful to the lab technicians—Ms. Katharina Gunkel, Ms. Maren Stella Müller, and Ms. Lara Ständer—for taking care of the cells and the lab, and for their weekly assistance with my experiments. I acknowledge the Machine Shop at the Max Planck Institute for Dynamics and Self-Organization (MPI-DS), and particularly Mr. Andy Heil, for helping us build our custom cell adhesion assay setup. I am thankful to Dr. Mišo Mitkovski and Mr. Heiko Röhse for their expertise and technical assistance at the Facility for Light Microscopy at the Max Planck Institute for Multidisciplinary Sciences (MPI-NAT), City Campus, for multiphoton and confocal microscopy. I also thank the Facility for Light Microscopy for access to software tools such as Arivis and Nikon NIS Elements for analysis. I would also like to thank Ms. Angela Gremmel at MPI-DS for helping with all the bureaucracy in Germany and MPI-DS. I thank MPI-DS and the Indian Institute of Science Education and Research (IISER), Pune, for the opportunity to pursue this master's thesis, and MPI-DS for financial support for my stay. I acknowledge the receipt of the Kishore Vaigyanik Protsahan Yojana (KVPY) fellowship. en_US
dc.language.iso en en_US
dc.subject mechanobiology en_US
dc.subject tissue morphogenesis en_US
dc.subject third harmonic generation (THG) en_US
dc.subject second harmonic generation (SHG) en_US
dc.subject micropatterning en_US
dc.subject fluid shear stress en_US
dc.subject cell-substrate adhesion en_US
dc.subject Epithelial mechanics en_US
dc.subject MDCKII cells en_US
dc.subject dome formation en_US
dc.subject autofluorescence en_US
dc.subject cell motility en_US
dc.subject actomyosin contractility en_US
dc.subject blebbistatin en_US
dc.subject PDMS en_US
dc.title Understanding the Role of Cellular Dynamics in MDCKII Domes Formation en_US
dc.type Thesis en_US
dc.type Dissertation en_US
dc.description.embargo No Embargo en_US
dc.type.degree BS-MS en_US
dc.contributor.department Dept. of Biology en_US
dc.contributor.registration 20211273 en_US


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  • MS THESES [2219]
    Thesis submitted to IISER Pune in partial fulfilment of the requirements for the BS-MS Dual Degree Programme/MSc. Programme/MS-Exit Programme

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