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Reward-based learning through layer-specific cortical optogenetic stimulation in mice

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dc.contributor.advisor Petersen, Carl
dc.contributor.author KARTHIK, ANAND
dc.date.accessioned 2026-05-20T11:02:32Z
dc.date.available 2026-05-20T11:02:32Z
dc.date.issued 2026-05
dc.identifier.citation 55 en_US
dc.identifier.uri http://dr.iiserpune.ac.in:8080/xmlui/handle/123456789/11095
dc.description.abstract In our everyday lives, we perform multiple sensorimotor transformations, where a particular sensory stimulus triggers an appropriate motor response. A well-studied task for investigating sensorimotor transformations involves training water-restricted mice to lick for a water reward in response to a brief whisker stimulus. Evidence suggests that the whisker primary somatosensory cortex (wS1) contributes significantly to detecting the whisker stimulus in this task. The wS1 is organised into 6 layers, with neurons in Layer 4 (L4) receiving major sensory inputs from the brainstem and the thalamus. The sensory information then rapidly spreads to Layers 2/3 (L2/3), 5 (L5), and 6, which project to many cortical and subcortical structures, leading to a motor command. However, the neuronal population(s) in wS1 that play a critical role in driving goal-directed licking during this detection task remain unknown. We trained mice (expressing an excitatory opsin) from 4 layer-specific (L2/3, L4, L5 IT(Intratelencephalic) and L5-PT(Pyramidal tract)) Cre lines to lick in response to an optogenetic stimulus instead of a whisker stimulus. L4, L5-IT and L5-PT mice were able to respond to the optogenetic stimulus quickly (1st day) while L2/3 mice only responded on the 3rd day. When compared across layers, L4 and L5-IT mice showed a stronger response than L2/3 and L5-PT. L5-IT excitatory neurons may prove to be suitable for further investigation in this transformation due to their known projections to the striatal projection neurons in the dorsolateral striatum (some of which evoke licking). Overall, this project sheds light on the relative strength of the different layers of the wS1 in driving goal-directed licking and thus provides a basis for more focused investigations of critical subpopulations in the wS1 that facilitate sensorimotor transformations during the detection task. en_US
dc.description.sponsorship KVPY Scholarship, Prof. Carl Petersen (Thesis supervisor at EPFL, Switzerland) en_US
dc.language.iso en en_US
dc.subject Neuroscience en_US
dc.subject Learning en_US
dc.subject Barrel cortex en_US
dc.subject Optogenetics en_US
dc.subject Sensorimotor transformation en_US
dc.title Reward-based learning through layer-specific cortical optogenetic stimulation in mice en_US
dc.type Thesis en_US
dc.description.embargo No Embargo en_US
dc.type.degree BS-MS en_US
dc.contributor.department Dept. of Biology en_US
dc.contributor.registration 20211093 en_US


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  • MS THESES [2219]
    Thesis submitted to IISER Pune in partial fulfilment of the requirements for the BS-MS Dual Degree Programme/MSc. Programme/MS-Exit Programme

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