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  • A Green Solvent Induced DNA Package 
    Satpathi, Sagar; Sengupta, Abhigyan; HRIDYA, V. M.; GAVVALA, KRISHNA; Koninti, Raj Kumar; ROY, BIBHISAN; HAZRA, PARTHA (Nature Publishing Group, 2015-03)
    Mechanistic details of DNA compaction is essential blue print for gene regulation in living organisms. Many in vitro studies have been implemented using several compaction agents. However, these compacting agents may have ...
  • Design of Bivalent Nucleic Acid Ligands for Recognition of RNA-Repeated Expansion Associated with Huntington’s Disease 
    THADKE, SHIVAJI A.; HRIDYA, V. M.; MUKHERJEE, ARNAB (American Chemical Society, 2018-03)
    We report the development of a new class of nucleic acid ligands that is comprised of Janus bases and the MPγPNA backbone and is capable of binding rCAG repeats in a sequence-specific and selective manner via, inference, ...
  • Probing the Viscosity Dependence of Rate: Internal Friction or the Lack of Friction? 
    HRIDYA, V. M.; MUKHERJEE, ARNAB (American Chemical Society, 2018-10)
    Deviation from the Kramers' inverse viscosity dependence of rate, k proportional to 1/eta, is often attributed to the presence of internal friction in proteins after Ansari et al. in 1992 showed that the folding rate could ...
  • Shape selective bifacial recognition of double helical DNA 
    Thadke, Shivaji A.; HRIDYA, V. M.; Perera, J. Dinithi R.; Gil, Roberto R.; MUKHERJEE, ARNAB; H. Ly, Danith (Nature Publishing Group, 2018-11)
    An impressive array of antigene approaches has been developed for recognition of double helical DNA over the past three decades; however, few have exploited the ‘Watson–Crick’ base-pairing rules for establishing sequence-specific ...
  • Dynamical Recrossing in the Intercalation Process of the Anticancer Agent Proflavine into DNA 
    HRIDYA, V. M.; Hynes, James T.; MUKHERJEE, ARNAB (American Chemical Society, 2019-12)
    Intercalation into DNA is the interaction mode of some anthracycline antibiotics. Recently, the molecular mechanism of this process was explored using the static free energy landscape. Here we explore the dynamical effects ...

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